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    <updated>2008-07-01T15:29:04Z</updated>

    <author>
        <name>IanMulvany</name>
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    <id>tag:vox.com,2006:6p00d09e7c9248be2b/</id>

    <subtitle>somewhat continously</subtitle>


    
    <entry>
        <title>Why the LHC is not really that impressive</title>
    
    
    
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        <published>2008-07-01T15:29:04Z</published>
        <updated>2008-07-01T15:29:04Z</updated>
    
        <author>
            <name>IanMulvany</name>
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            <p>Yesterday the Guardian had a special pull out section dedicated to the<br />
LHC. If you browse through the articles you find lots of comments along<br />
the lines of</p>

<p>&quot;temple to mystery and imagination&quot;, &quot;a journey to the edge of<br />
understanding&quot;. &quot;a modern cathedral to our relationship with the<br />
universe&quot;, and so on. From the superlatives that are being written one<br />
would think that the LHC is the best thing to happen to enlightenment<br />
since some fat chinese guy sat beneath a tree, and that it is the summit<br />
of human imagination, achievement and art. Well, I just don&#39;t buy all<br />
of that crap.</p>

<p>Reading these articles got me thinking about what the LHC is, and<br />
fundamentally it&#39;s just a larger detector than what we already had<br />
before. As I see it, it&#39;s an inevitable extension of what you do if you<br />
want to measure something that we already know how to measure (particle<br />
tracks), with better precision over a higher energy range.<br />
The bottom line is that we have been doing this since the 1920&#39;s.</p>

<p>If you look at it as just being an artifact then it is neat, but there<br />
are many other piece of artistry that required as much imagination,<br />
effort, skill and chutzpah to bring together. The moon landings are one,<br />
the regularity of probes landing on mars another. The engineering<br />
required to make a large city like New York work always blows my mind,<br />
and that emerged from a bottom up self organization of 15 million souls<br />
trying to find a way to survive in an area of land a little too small<br />
for them all.</p>

<p>As we look around the world at the things we as a species have built<br />
there are many such artifacts that can inspire our awe and wonder. I<br />
don&#39;t think that the LHC can lay a claim to be at the pinnacle, though<br />
no doubt it is a good example of a big complicated object that make<br />
people look small when they stand beside it.</p>

<p>There is something to wonder at in all of this, and that is the idea<br />
behind the inevitability of something like the LHC. That idea is the<br />
atomic and quantum electrodynamical nature of the world. In that there<br />
is something to be proud of as a species. I don&#39;t see the LHC as being a<br />
radical departure from this idea, but rather an object whose existence<br />
is quintessentially rooted in that idea.</p>

<p>One could almost argue that the LHC represents a failure of the<br />
imagination. We are faced with limits to our ability to test the<br />
mathematics that we have written down against the atoms that we write<br />
with. We cannot tease apart the Fynemann diagrams to tell us more about<br />
the world, and so we resort to a bigger hammer rather than a more subtle<br />
approach that might look to other ways to coax the mysteries of the<br />
universe out of their hiding places.</p>

<p>There have been some papers that have come out recently looking for<br />
connections in the physics of super fluids with the imagined state of<br />
the early universe, the idea being that looking at the behavior of<br />
vortices in super cooled liquids could demonstrate identical physics to<br />
the phases of matter at the point of various decouplingings in energy<br />
scales. It&#39;s pretty clear that these models are yet toy models, but<br />
perhaps they point out an orthogonal direction to building massive atom<br />
smashers.</p>

<p>I want to be clear that I do applaud the work of the thousands of people<br />
working at Cern, and I do think that the billions of euro that something<br />
like this costs is more than worth the investment. I appreciate how hard<br />
it is to deal with systematics on something of this scale, and it is a<br />
minor miracle, but I just don&#39;t think that the artifact deserves unconstrained<br />
adulation over the ideas that is reflects.</p>
        
    
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    <entry>
        <title>networks; head to head</title>
    
    
    
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        <published>2008-06-25T15:20:53Z</published>
        <updated>2008-06-26T11:03:04Z</updated>
    
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            <p>The second talk in the evening CREEN parallel session is from J. Holyst<br />
about phase transitions in coupled complex networks where the network<br />
properties are different in the two groups.</p>

<p>In one group there are a smaller number of members, but they are tightly<br />
coupled. The second group is larger, but less tightly coupled. The model<br />
uses an Ising model. The less coupled group has higher fluctuation in<br />
opinion, and when it is brought into contact with the smaller group the<br />
larger group undergoes a phase transition. To reverse the process if you<br />
can find a hub in the tightly coupled system then when you convince them<br />
their opinions gain traction.</p>

<p>This is a really nice paper and there are obvious tendancies to draw<br />
parallels with real communities, such as for example two scientific<br />
communities, or an immigrant community, but I am fairly certain that<br />
this would at the moment be too simplistic.</p>

<p>He goes on to show a face off between ER graphs vs BA graphs, and this<br />
shows that network structure has signifigant effect on the suseptability<br />
of the community to opinion change.</p>

<p>One big application could be to look at these results in the context of<br />
the new vote that Ireland will probably undergo early next year to<br />
re-ratify the Lison treaty (I mean, I assume that is what is going to<br />
happen in Ireland next year).</p>
        
    
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    <entry>
        <title>Creationism as Science,</title>
    
    
    
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        <published>2008-06-25T14:59:37Z</published>
        <updated>2008-06-25T14:59:37Z</updated>
    
        <author>
            <name>IanMulvany</name>
            <uri>http://partiallyattended.vox.com/?_c=feed-atom-full</uri>
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            <p>I&#39;m at the netsci08 conference and there is a really delightful talk<br />
about the network of papers published in the creationisim/evolution<br />
debate.</p>

<p>The group looked at key people in the ID debate and people who acted as<br />
strong defenders of evolution. One can then make a graph of the links<br />
between the groups and intra-groups based on citation and co-citation.</p>

<p>Now one area of social science that is pretty interesting in this debate<br />
is looking at triads, as there are clearly going to be antagonitic<br />
relationships in this debate.</p>

<p>In the graph evolutionists are blue, creationists are yellow and Dawkins<br />
is red on his own.</p>

<p>From the graph it is clear that there are some people who are opinion<br />
leaders.</p>

<p>Ok, what is interesting is that there are far more mixed triples than<br />
similar triples in the graph, meaning that people from both sides seem<br />
to be spending more time slagging each other off than agreeing with<br />
their friends.</p>

<p>This is the first time that I would be tempted to say that the study of<br />
creationisim could be considered science.</p>
        
    
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    <entry>
        <title>network branching, netsci08</title>
    
    
    
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        <published>2008-06-25T10:50:56Z</published>
        <updated>2008-06-25T10:50:56Z</updated>
    
        <author>
            <name>IanMulvany</name>
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            <p>I&#39;m really torn by the number of great talks on today. There are three<br />
parallel sessions, and for each time slot I want to be in at least two<br />
places at once. I&#39;m going to try to pick out talks that have some<br />
relation to online social networks, community detection and scientific<br />
networks, but some of the talks on the theory of clustering are<br />
conflicting directly with some use cases of looking at some online<br />
social networks. Ahh, what a dilemma.</p>

<p>The opening talk of this session was from Stwphen Uzzo talking about the</p>

<p>The next talk was by M.C Gonzales looking at the network of travel<br />
patterns. This was the paper that made the cover of Nature.</p>

<p>The big question is trying to find out what the travel patterns of<br />
people are. Thhe big problem is that getting data is apparently quite<br />
hard.</p>

<p>The solution is to follow mobile phone signals, following 10^5 people over<br />
10^6 locations over six months.</p>

<p>I&#39;m looking at the movie of their data, and it is clear that many people<br />
don&#39;t move very much, and other people move a lot. Of course one wants<br />
to know some information about the people to see what effect like age,<br />
wealth and occupation will have on these results. Again I&#39;m looking for<br />
something surprising.</p>

<p>There is a nice graph showing corellation over time, it is hugly spiked<br />
on 24 hours. Not surprising, but a good reality check on the data.</p>

<p>I&#39;m going to head to one of the other sessions after this talk.</p>

<p>This talk, though, is very nice. Once again there is evedence that our<br />
behaviour is depressingly regular. Also the longer a journey the more likely<br />
that a journey is going to be linear.</p>
        
    
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    <entry>
        <title>Networks in Space, Mark Newman, netsci08</title>
    
    
    
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        <published>2008-06-25T09:35:07Z</published>
        <updated>2008-06-25T09:35:07Z</updated>
    
        <author>
            <name>IanMulvany</name>
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            <p>Mark Newman, Networks in Space,</p>

<p>This is about networks in geographic space.</p>

<p>Mark is looking at properties of networks that are tied to geography.<br />
Transport networks are a good example, and we are looking at the<br />
difference between road and air networks.</p>

<p>The road and air networks are very different, even though you use both<br />
of them for getting from A to B.</p>

<p>There is different bahviour, could I say &#39;driving&#39; the use of these<br />
networks. For roads we want to minimze the length of our journey, but<br />
that&#39;s not such an important factor in flight journeys. When we fly we<br />
like to take direct flights, and minimize the number of flight hops that<br />
we take.</p>

<p>If you model this behviour you get out networks that look a lot like<br />
road and flight networks.</p>

<p>Their first model looked at connecting randomly distributed nodes.</p>

<p>In order not to get influenced by population density they made a map<br />
that is rescaled by population density. This is called a cartogram.<br />
You can see some really nice election cartograms that Newmann and<br />
Gastern made here: http://www.cscs.umich.edu/~crshalizi/election/</p>

<p>There is a really nice historical example from Raisz from the<br />
Geographical REview from 1943.</p>

<p>It looks like most recent attempts have been hand-drawn, but they look<br />
pretty shit.</p>

<p>Newman and Gastner made a difffusion algorithm that allows you to do<br />
this quickly.</p>

<p>OK, it looks like this started off as a network talk, but segwayed into<br />
a demo of this mapping technique. Ahh, no, we are back to looking at<br />
airports.</p>

<p>The interesting result from this talk is that the best covering fro<br />
utilities such as airports or post offices does not grow lineraly with<br />
popultaion, but to the power of 2/3.</p>

<p>This was also a pretty nice talk.</p>
        
    
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    <entry>
        <title>netsci08 opening keynote</title>
    
    
    
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        <published>2008-06-25T09:01:11Z</published>
        <updated>2008-06-25T09:02:28Z</updated>
    
        <author>
            <name>IanMulvany</name>
            <uri>http://partiallyattended.vox.com/?_c=feed-atom-full</uri>
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            <p>Nicholas Christakis, Harvard, &quot;eat drink and be merry, the spread of<br />
health phenomena in social networks&quot;.</p>

<p>This talk is looking at the spread of desies throgh social interactions,<br />
rather than other types of interactins. The main study was looking at<br />
obesity using the Framingham Heart Study Social Network. This seems like<br />
a very famouse social network health related study, so I&#39;m not going to<br />
go into detail about that, but the bottom line is that they were able to<br />
construct the social interactions from this study by digging through the<br />
huge paper archive. They were able to look at friend, relative and<br />
co-worker ties.</p>

<p>The main study was looking at about 5k individuals out of 12k, taken<br />
from 1973 onwards.</p>

<p>Nice, node ssize is related to a person&#39;s weight!</p>

<p>There is clear clustering of obese nodes in the network, now is this<br />
clustering random or structured?</p>

<p>Well, it&#39;s more clustered than random.</p>

<p>There are a couple of reasons why this might be the case. It could be<br />
that obese people like each other, people might be susceptible to local<br />
factors, or there might be some kind of peer pressure.</p>

<p>By looking at time evolution the hope is that they might be able to find<br />
&#39;patient 0&#39; for the obesity epedmic. OK, video is coming up now ...!</p>

<p>OK, looking at people getting fatter all over america from 1972 onwards,<br />
I&#39;m going for a run later!</p>

<p>The effect is not centered in one location, but it seems that it&#39;s an<br />
epidemic that had multiple starting points in the network.</p>

<p>Looking at the directionality of ties of friendship helps you make<br />
inferences about causes. Wow, if you are friends with someone who is<br />
friends with you, and they get obese, you have 300% greater chance to<br />
gain weight. Stay friends with thin people!</p>

<p>It looks like much of this is driven by social norms.</p>

<p>They also have gwo data from the network, that is really cool.</p>

<p>They can convert location to wealth, and can take this into account when<br />
looking at the evolution of the network.</p>

<p>This data is really really cool.</p>

<p>No drop off in effect with distance, it is really the social tie that is<br />
important.</p>

<p>They also looked at the effect of smoking, and were able to take this<br />
into account.</p>

<p>So their working hyppothesis is that it might be the spread of behaviour<br />
and habit, perticluarly shared behaviour, going runnning vs going for a<br />
beer.</p>

<p>It might be the spread of an idea, the spread of what an acceptable body<br />
size might be.</p>

<p>OK, that&#39;s pretty amazing, and you can tease a hugh amount of<br />
information out of this study. Liklihood of quitting smoking, of how<br />
that is effected by education, and friendship tie.</p>

<p>I have to say, there is not a lot of results that are amazingly<br />
astonishing. They have food networks, like the bannana network and the<br />
friend chicken network.</p>

<p>They are also looking at emotions. We know that emotions can spread<br />
through groups, on diads. Could emotions spread hyper-diadically, and<br />
over longer time frames?</p>

<p>There is strong clustering of happienss, and your happiness seems<br />
coreelated with people who are outside of your direct social horizon.<br />
Interestingly happiness does not spread in the workplace (I think that<br />
was the point), but happy people have higher clustering and better<br />
centrality in the network.</p>

<p>There seems to be a half life for catching happiness from your network,<br />
this is about 6 months. There is also a strong local effect, you need<br />
happy people to be within about two miles of you, and to be having happy<br />
events happening to them every six months or so.</p>

<p>Ahh, you can look at smiling on facebook. Right, I gotta put up some<br />
happy pictures on my profiles!</p>

<p>Ahh, thiness also spreads, but the reason they have been looking at<br />
obesity is that this study is looking at the obesity epidemic. The<br />
network shows you the magnification of the phenomena, not the cause or<br />
origin of the phonomenon.</p>

<p>Interesting question, if you wanted to hire flight attendants who you<br />
didn&#39;t want to gain weight, should you hire them based on the bmi of<br />
their friends? Well, the answer is that in a workplace if a certain<br />
behaviour begins to spread it is likely to have a network effect. The<br />
flpiside is that you can use these network effects to more economic<br />
effect by trying to promote certain behaviour through targeting core<br />
groups in the workplace.</p>
        
    
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        </content>
    
    <category term="netsci08" scheme="http://partiallyattended.vox.com/tags/netsci08/" label="netsci08" />
    
    </entry>

    
    <entry>
        <title>netsci08 blogging</title>
    
    
    
        <link rel="alternate" type="text/html" title="netsci08 blogging" href="http://partiallyattended.vox.com/library/post/netsci08-blogginh.html?_c=feed-atom-full" />
    
        
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                <id>tag:vox.com,2008-06-25:asset-6a00d09e7c9248be2b00fad693bf6d0005</id>
        <published>2008-06-25T08:05:24Z</published>
        <updated>2008-06-25T08:34:23Z</updated>
    
        <author>
            <name>IanMulvany</name>
            <uri>http://partiallyattended.vox.com/?_c=feed-atom-full</uri>
        </author>
    
        
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            <p>I&#39;m in Norwich all this week attending Netsci08<br />
http://www.ifr.ac.uk/netsci08/, the internatinal workshop and conference<br />
on network science. It&#39;s a week long event, and broadly speaking it<br />
looks like there are three types themes that are being discussed here:<br />
biological networks, pure networks science and community detection in<br />
networks, principlaly emergent networks of the kind we see in the<br />
internet.</p>

<p>I&#39;m twittering about the meeting using the tag #netsci08, but it seems<br />
that I&#39;m the only one out there in the twitterverse who is also at this<br />
meeting. Not enough power in the lecture hall, and wifi is a little<br />
ropey, but the conference is pretty good so far.</p>

<p><br />
The talks on Monday were about some basics on network mathematics, and<br />
on network science in the social sciences. I&#39;ll go back over my notes<br />
and give a quick report on them when I get a chance to catchup, but the<br />
discussion in the evening was pretty interesting, and the talk in the<br />
morning touced on some very important topics.</p>

<p>The Tuesday morning tutorial is on economics and networks. The morning<br />
model was very simple, and I think that&#39;s fair enough, but I got the<br />
feeling that the level of the audience, at least on the side of the room<br />
that I am sitting on, was high enough to have taken a bit more robust<br />
model, so I got the feeling that there was some discomfot with the model<br />
presented.</p>

<p>The after-coffee section is focussing on social influencers, now this is<br />
interesting.</p>

<p>How is it that information flow is highly assymetric in the world?</p>

<p>The model is a mmulti-state model with differeing outcomes. Individuals<br />
don&#39;t know the true state of the system, but they have beliefs about the<br />
states. Sounds like a hidden markov model.</p>

<p>The model is stationary, and we want to see how the choices we make<br />
change the beliefs that we have. Could be a bayseian network? Let&#39;s see.<br />
What I am hoping to see from this model is how reccomendations can<br />
travel throgh a network. There is a network of communication between the<br />
network. The model can integrate dynamics, the dynamics of belief.</p>

<p>There is also feedback between actions and beliefs. The main result is<br />
that as time goes by new information has less effect, and so beliefs<br />
converge in the network. This is a consequence of Martingale&#39;s theorm.</p>

<p>The big question is whether we get optimal actions, and the big result<br />
is that the ability to explore the action space and find the best action<br />
is depenant upon the structure of the network. That is really<br />
interesting.</p>

<p>Oh my God, someone has an OLPC machine in the audience, how cool is<br />
that!!</p>

<p>Anyway, back to the talk. So this is indeed a Bayseian network. The<br />
anti-intutive outcome from this model is that if you have to build a one<br />
time only network that can&#39;t be changed later, then you have the best<br />
chance of getting optimal behaviour if no one person has undue<br />
influence, hoever I think that for online social networks there is a lot<br />
of dunamics going on that can pull you out of local sub-optimal minima.</p>
        
    
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    <category term="netsci08" scheme="http://partiallyattended.vox.com/tags/netsci08/" label="netsci08" />
    
    </entry>

    
    <entry>
        <title>I didn&#39;t expect lock in so quickly</title>
    
    
    
        <link rel="alternate" type="text/html" title="I didn&#39;t expect lock in so quickly" href="http://partiallyattended.vox.com/library/post/i-didnt-expect-lock-in-so-quickly.html?_c=feed-atom-full" />
    
        
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                <id>tag:vox.com,2008-06-17:asset-6a00d09e7c9248be2b00fad69152480005</id>
        <published>2008-06-17T09:52:51Z</published>
        <updated>2008-06-17T09:52:51Z</updated>
    
        <author>
            <name>IanMulvany</name>
            <uri>http://partiallyattended.vox.com/?_c=feed-atom-full</uri>
        </author>
    
        
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            <p>I&#39;ve just signed up for an account with twidox, which is a start up<br />
that is collecting shared documents of interest to scientists, I<br />
believe. They are in the private beta stage, but had a link on their<br />
homepage for requesting an account. I got the following message when I<br />
hit the verification link:</p>

<p><br />
Registration is taking place!</p>

<p>Many thanks for you interest in twidox. Your account has been activated.<br />
We will send you your private-beta lock-in details very soon.</p>

<p>We thank you for your support.</p>

<p>Your twidox-team</p>
        
    
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    </entry>

    
    <entry>
        <title>social networks</title>
    
    
    
        <link rel="alternate" type="text/html" title="social networks" href="http://partiallyattended.vox.com/library/post/social-networks.html?_c=feed-atom-full" />
    
        
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                <id>tag:vox.com,2008-06-12:asset-6a00d09e7c9248be2b00fad690b0750004</id>
        <published>2008-06-12T10:24:32Z</published>
        <updated>2008-06-12T10:24:32Z</updated>
    
        <author>
            <name>IanMulvany</name>
            <uri>http://partiallyattended.vox.com/?_c=feed-atom-full</uri>
        </author>
    
        
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            <p>There is a tension between the providers of social software, and the<br />
way we behave. When I move from one city to another my social network<br />
changes as that&#39;s very location dependent, but when I do have that<br />
network set up for the most part, I don&#39;t expect restrictions on where<br />
I can go in that city with my friends. For sure, some friends of mine<br />
might not be caught dead in the palace bar, they only drink in the<br />
stag&#39;s head, but I could drop in with my palace friends for a quick<br />
pint and catch up on news.</p>

<p>On the internet distance only affects us on the scale of timezones,<br />
and even there our tail of interaction is much broader. Our changing<br />
activities very much determine the networks we hold on to. I no longer<br />
practice science, but I&#39;m still in contact with my old climbing<br />
buddies. However a big change at the moment is that the places we go<br />
on the internet still don&#39;t play well with each other in the same way<br />
that they do in real life.</p>

<p>I hope that truly mobile social networks will emerge, and I think they<br />
will be driven my our address books on our phones. First we will have<br />
real time tracking of the location of our contacts (to the point that<br />
mutual permission is granted), and then this will start to seep into<br />
awareness of location on the web. It&#39;s something that has been faces<br />
before, with IM and VOIP walled gardens. So far only email and phone<br />
numbers and physical mail addresses don&#39;t have this problem, and<br />
perhaps for that reason those will be the media that crack the problem<br />
first.</p>
        
    
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    <entry>
        <title>The gap between Open Access and Editorial Quality</title>
    
    
    
        <link rel="alternate" type="text/html" title="The gap between Open Access and Editorial Quality" href="http://partiallyattended.vox.com/library/post/the-gap-between-open-access-and-editorial-quality.html?_c=feed-atom-full" />
    
        
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                <id>tag:vox.com,2008-06-10:asset-6a00d09e7c9248be2b00fad69023ff0004</id>
        <published>2008-06-10T13:57:33Z</published>
        <updated>2008-06-10T13:57:33Z</updated>
    
        <author>
            <name>IanMulvany</name>
            <uri>http://partiallyattended.vox.com/?_c=feed-atom-full</uri>
        </author>
    
        
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            <p>I&#39;m reading a great article by Joe Esposito on Open Access. You can read<br />
the article<br />
here:http://quod.lib.umich.edu/cgi/t/text/text-idx?c=jep;cc=jep;rgn=main;view=text;idno=3336451.0011.203.</p>

<p>The article&#39;s main claim is that attention is the barrier to<br />
disemination rather than access. Another claim of this article is that<br />
paid for publishing platforms are good for readers in that they act as<br />
an attention filter.</p>

<p>One of the main claims of the article is that Open Content in a sea of<br />
other content will exist beyond the scope of peer review and editorial<br />
review. That is certainly the case at the moment for the most part.<br />
Beyond Google&#39;s search rank, there are few other effective ways of using<br />
machines to rank the quality of content, and certainly none at the<br />
moment that apply specifically to academic content.</p>

<p>I think that one of the issues is that the volume of signals about the<br />
quality of data that can be data mined compared to the data that needs<br />
to be mined is still tiny, and the tools to do this mining almost non<br />
existant. Social signals from tools such as Connotea are only just<br />
beginnig to create traces, but they are still small.</p>

<p>There is a hope that automatic data mining of sources will push out the<br />
need for manual editorial control, and there are platforms out there<br />
with enough computational power to do this, it&#39;s just that these<br />
platforms at the moment have much more important jobs to do.</p>

<p>Even when hardware and storage really are commodotized (and the<br />
existence of S3, EC2, AppEngine should leave no doubt in our minds that<br />
this is the way things are going), who is going to write the algorithms<br />
to review papers for us. Perhaps we only need a few people to do this,<br />
and so I shouldn&#39;t worry too much about that, but I still don&#39;t see this<br />
kind of thing happening for a few years yet.</p>

<p>There is another interesting aspect of Open Access that springs to<br />
mind while reading this paper.</p>

<p>The article does not address the machine redability of published work,<br />
and how restrictions on that type of access can hinder auto-mining of<br />
facts and figures, the aggregate results of which may command<br />
signifigantly more attention than the individual componenets.</p>

<p>Finally Joe has a nice little analysis of the kinds of costs associated<br />
with building new publshing platforms to market.</p>

<p>Alltogether I really liked this paper.</p>
        
    
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